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Protein profiling and transcript expression levels of heat shock proteins in 17beta-estradiol-treated human MCF-7 breast cancer cells.
Using proteomics, proteins regulated by 17beta-estradiol (E2) were ...
Lee SU, Kim BT, Min YK, Kim SH,
http://dx.doi.org/10.1016/j.cellbi.2006.07.005
Cell Biol Int. 2006 Dec;30(12):983-91. Epub 2006 Aug 7.
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Genome-wide analyses show that nuclear and cytoplasmic RNA levels are differentially affected by dioxin.
The aryl hydrocarbon receptor (AHR) mounts the body's main molecular ...
Schwanekamp JA, Sartor MA, Karyala S, Halbleib D, Medvedovic M, Tomlinson CR,
http://dx.doi.org/10.1016/j.bbaexp.2006.07.005
Biochim Biophys Acta. 2006 Aug-Sep;1759(8-9):388-402. Epub 2006 Aug 7.
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JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions.
BACKGROUND: Predicting complete protein-coding genes in human DNA remains ...
Allen JE, Majoros WH, Pertea M, Salzberg SL,
http://dx.doi.org/10.1186/gb-2006-7-s1-s9
Genome Biol. 2006;7 Suppl 1:S9.1-13. Epub 2006 Aug 7.
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Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.
BACKGROUND: As part of the ENCODE Genome Annotation Assessment Project ...
Flicek P, Brent MR,
http://dx.doi.org/10.1186/gb-2006-7-s1-s8
Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.
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Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.
BACKGROUND: Accurate and automatic gene identification in eukaryotic ...
Djebali S, Delaplace F, Crollius HR,
http://dx.doi.org/10.1186/gb-2006-7-s1-s7
Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.
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Vertebrate gene finding from multiple-species alignments using a two-level strategy.
BACKGROUND: One way in which the accuracy of gene structure prediction in ...
Carter D, Durbin R,
http://dx.doi.org/10.1186/gb-2006-7-s1-s6
Genome Biol. 2006;7 Suppl 1:S6.1-12. Epub 2006 Aug 7.
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Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.
BACKGROUND: This paper describes Pairagon+N-SCAN_EST, a gene annotation ...
Arumugam M, Wei C, Brown RH, Brent MR,
http://dx.doi.org/10.1186/gb-2006-7-s1-s5
Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.
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GENCODE: producing a reference annotation for ENCODE.
BACKGROUND: The GENCODE consortium was formed to identify and map all ...
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigo R,
http://dx.doi.org/10.1186/gb-2006-7-s1-s4
Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.
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Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.
BACKGROUND: This study analyzes the predictions of a number of promoter ...
Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL,
http://dx.doi.org/10.1186/gb-2006-7-s1-s3
Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7.
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EGASP: the human ENCODE Genome Annotation Assessment Project.
BACKGROUND: We present the results of EGASP, a community experiment to ...
Guigo R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG,
http://dx.doi.org/10.1186/gb-2006-7-s1-s2
Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7.
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