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Genomic comparison using data mining techniques based on a possibilistic fuzzy sets model.
Current copiousness of genomic information stored in biological databases ...
Balzano W, Del Sorbo MR,
http://dx.doi.org/10.1016/j.biosystems.2006.07.014
Biosystems. 2007 Apr;88(3):343-9. Epub 2006 Nov 10.
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From glycomics to functional glycomics of sugar chains: Identification of target proteins with functional changes using gene targeting mice and knock down cells of FUT8 as examples.
Comprehensive analyses of proteins from cells and tissues are the most ...
Kondo A, Li W, Nakagawa T, Nakano M, Koyama N, Wang X, Gu J, Miyoshi E, Taniguchi N,
http://dx.doi.org/10.1016/j.bbapap.2006.10.011
Biochim Biophys Acta. 2006 Dec;1764(12):1881-9. Epub 2006 Nov 10.
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Computational prediction of genomic functional cores specific to different microbes.
Computational and experimental attempts tried to characterize a universal ...
Carbone A,
http://dx.doi.org/10.1007/s00239-005-0250-9
J Mol Evol. 2006 Dec;63(6):733-46. Epub 2006 Nov 10.
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Molecular analysis of estrogen receptor alpha gene AGATA haplotype and SNP12 in European populations: potential protective effect for cryptorchidism and lack of association with male infertility.
BACKGROUND: A specific haplotype (AGATA) in the estrogen receptor alpha ...
Galan JJ, Guarducci E, Nuti F, Gonzalez A, Ruiz M, Ruiz A, Krausz C,
http://dx.doi.org/10.1093/humrep/del391
Hum Reprod. 2007 Feb;22(2):444-9. Epub 2006 Nov 10.
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STRING 7--recent developments in the integration and prediction of protein interactions.
Information on protein-protein interactions is still mostly limited to a ...
von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Kruger B, Snel B, Bork P,
http://dx.doi.org/10.1093/nar/gkl825
Nucleic Acids Res. 2007 Jan;35(Database issue):D358-62. Epub 2006 Nov 10.
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OncoDB.HCC: an integrated oncogenomic database of hepatocellular carcinoma revealed aberrant cancer target genes and loci.
The OncoDB.HCC (http://oncodb.hcc.ibms.sinica.edu.tw) is based on physical ...
Su WH, Chao CC, Yeh SH, Chen DS, Chen PJ, Jou YS,
http://dx.doi.org/10.1093/nar/gkl845
Nucleic Acids Res. 2007 Jan;35(Database issue):D727-31. Epub 2006 Nov 10.
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Identification of alternative 5'/3' splice sites based on the mechanism of splice site competition.
Alternative splicing plays an important role in regulating gene ...
Xia H, Bi J, Li Y,
http://dx.doi.org/10.1093/nar/gkl900
Nucleic Acids Res. 2006;34(21):6305-13. Epub 2006 Nov 10.
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The SUPERFAMILY database in 2007: families and functions.
The SUPERFAMILY database provides protein domain assignments, at the SCOP ...
Wilson D, Madera M, Vogel C, Chothia C, Gough J,
http://dx.doi.org/10.1093/nar/gkl910
Nucleic Acids Res. 2007 Jan;35(Database issue):D308-13. Epub 2006 Nov 10.
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Comparative proteomics of Dehalococcoides spp. reveals strain-specific peptides associated with activity.
Anaerobic reductive dehalogenation by Dehalococcoides spp. is an ideal ...
Morris RM, Fung JM, Rahm BG, Zhang S, Freedman DL, Zinder SH, Richardson RE,
http://dx.doi.org/10.1128/AEM.02129-06
Appl Environ Microbiol. 2007 Jan;73(1):320-6. Epub 2006 Nov 10.
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PEAKS: identification of regulatory motifs by their position in DNA sequences.
Many DNA functional motifs tend to accumulate or cluster at specific gene ...
Bellora N, Farre D, Mar Alba M,
http://dx.doi.org/10.1093/bioinformatics/btl568
Bioinformatics. 2007 Jan 15;23(2):243-4. Epub 2006 Nov 10.
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