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Generalized method for probability-based peptide and protein identification from tandem mass spectrometry data and sequence database searching.
Tandem mass spectrometry-based proteomics is currently in great demand of ...
Ramos-Fernandez A, Paradela A, Navajas R, Albar JP,
http://dx.doi.org/10.1074/mcp.M800122-MCP200
Mol Cell Proteomics. 2008 Sep;7(9):1748-54. Epub 2008 May 31.
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Investigation of protein-tyrosine phosphatase 1B function by quantitative proteomics.
Because of their antagonistic catalytic functions, protein-tyrosine ...
Mertins P, Eberl HC, Renkawitz J, Olsen JV, Tremblay ML, Mann M, Ullrich A, Daub H,
http://dx.doi.org/10.1074/mcp.M800196-MCP200
Mol Cell Proteomics. 2008 Sep;7(9):1763-77. Epub 2008 May 31.
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Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.
We present a new version of Babelomics, a complete suite of web tools for ...
Al-Shahrour F, Carbonell J, Minguez P, Goetz S, Conesa A, Tarraga J, Medina I, Alloza E, Montaner D, Dopazo J,
http://dx.doi.org/10.1093/nar/gkn318
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W341-6. Epub 2008 May
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DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions.
The structures of DNA-protein complexes have illuminated the diversity of ...
Gao M, Skolnick J,
http://dx.doi.org/10.1093/nar/gkn332
Nucleic Acids Res. 2008 Jul;36(12):3978-92. Epub 2008 May 31.
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Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex.
The multisubunit Mediator (MED) complex bridges DNA-bound transcriptional ...
Bourbon HM,
http://dx.doi.org/10.1093/nar/gkn349
Nucleic Acids Res. 2008 Jul;36(12):3993-4008. Epub 2008 May 31.
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Identification of auxins by a chemical genomics approach.
Thirteen auxenic compounds were discovered in a screen of 10 000 compounds ...
Christian M, Hannah WB, Luthen H, Jones AM,
http://dx.doi.org/10.1093/jxb/ern133
J Exp Bot. 2008;59(10):2757-67. Epub 2008 May 31.
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Sudden unexpected death in infancy: evidence of infection. Morris JA, Harrison LM,
http://dx.doi.org/10.1016/S0140-6736(08)60774-6
Lancet. 2008 May 31;371(9627):1815-6.
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Insights and inferences about integron evolution from genomic data.
BACKGROUND: Integrons are mechanisms that facilitate horizontal gene ...
Nemergut DR, Robeson MS, Kysela RF, Martin AP, Schmidt SK, Knight R,
http://dx.doi.org/10.1186/1471-2164-9-261
BMC Genomics. 2008 May 31;9:261.
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Increased throughput and reduced carryover of mass spectrometry-based proteomics using a high-efficiency nonsplit nanoflow parallel dual-column capillary HPLC system.
We report a new design of a fully automated, high-efficiency parallel ...
Wang H, Hanash SM,
http://dx.doi.org/10.1021/pr700876g
J Proteome Res. 2008 Jul;7(7):2743-55. Epub 2008 May 31.
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Fluorescein as a versatile tag for enhanced selectivity in analyzing cysteine-containing proteins/peptides using mass spectrometry.
Fluorescence-based tagging in proteomics is useful in tracking and ...
Chen SH, Hsu JL, Lin FS,
http://dx.doi.org/10.1021/ac800436j
Anal Chem. 2008 Jul 1;80(13):5251-9. Epub 2008 May 31.
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